MicroCity | Microbes in the city: a metagenomic trait-based analysis of microbial metacommunity structure along urbanization gradients

Summary
Human induced environmental gradients have a strong effect on biodiversity and ecosystem functioning. Despite the valuable ecosystem services (such as biogeochemical cycling and xenobiotic degradation) provided by microbial communities, environmental conservation policies usually neglect microbial diversity. This can be in part attributed to our poor understanding of microbial community responses to anthropogenic influences in natural landscapes. Urban ecosystems are key examples of environments that are strongly impacted by anthropogenic activity. In addition to our need to understand how microbial communities respond to urbanization, urbanization gradients are also excellent model systems to study how the taxonomic and functional diversity and composition of microbial communities respond to anthropogenic stress in general.
In the here proposed project, we will study microbial communities in freshwater ponds located across well characterized urbanization gradients in Belgium. We will apply metagenomics in a molecular trait based approach in an effort to determine the influence of human induced environmental gradients on the biogeochemical cycling and xenobiotic degradation pathways in microbial communities. Also, we will analyse the role of the mobilome - mobile genetic elements such as plasmids and transposons - as a source of rapid evolution in microbial communities under anthropogenic stress. We will take a metacommunity approach in order to quantify the relative importance of local (environmental) and regional (spatial) processes in shaping bacterial communities across the studied gradients.
Our proposed study is unique as it combines the nascent theory of evolving metacommunities with a high throughput molecular approach, metagenomics, to better understand the impact of urbanization on microbial community structure and function.
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More information & hyperlinks
Web resources: https://cordis.europa.eu/project/id/655159
Start date: 01-05-2015
End date: 12-09-2017
Total budget - Public funding: 172 800,00 Euro - 172 800,00 Euro
Cordis data

Original description

Human induced environmental gradients have a strong effect on biodiversity and ecosystem functioning. Despite the valuable ecosystem services (such as biogeochemical cycling and xenobiotic degradation) provided by microbial communities, environmental conservation policies usually neglect microbial diversity. This can be in part attributed to our poor understanding of microbial community responses to anthropogenic influences in natural landscapes. Urban ecosystems are key examples of environments that are strongly impacted by anthropogenic activity. In addition to our need to understand how microbial communities respond to urbanization, urbanization gradients are also excellent model systems to study how the taxonomic and functional diversity and composition of microbial communities respond to anthropogenic stress in general.
In the here proposed project, we will study microbial communities in freshwater ponds located across well characterized urbanization gradients in Belgium. We will apply metagenomics in a molecular trait based approach in an effort to determine the influence of human induced environmental gradients on the biogeochemical cycling and xenobiotic degradation pathways in microbial communities. Also, we will analyse the role of the mobilome - mobile genetic elements such as plasmids and transposons - as a source of rapid evolution in microbial communities under anthropogenic stress. We will take a metacommunity approach in order to quantify the relative importance of local (environmental) and regional (spatial) processes in shaping bacterial communities across the studied gradients.
Our proposed study is unique as it combines the nascent theory of evolving metacommunities with a high throughput molecular approach, metagenomics, to better understand the impact of urbanization on microbial community structure and function.

Status

CLOSED

Call topic

MSCA-IF-2014-EF

Update Date

28-04-2024
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Horizon 2020
H2020-EU.1. EXCELLENT SCIENCE
H2020-EU.1.3. EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions (MSCA)
H2020-EU.1.3.2. Nurturing excellence by means of cross-border and cross-sector mobility
H2020-MSCA-IF-2014
MSCA-IF-2014-EF Marie Skłodowska-Curie Individual Fellowships (IF-EF)