D 1.5.2 SP1 Mouse Brain Organisation - Results for SGA1 Period 2

WPs involved: WP1.1, WP1.2, WP1.3, WP1.4 & WP1.5 Summary of SP Results for M13-24, broken down by Task: • Actual vs. planned results (due & done/due & not done) • Results passed to another Task, WP or SP (due & done/due & not done) • CDP products (due & done/due & not done) • Milestones due and achieved, how validated, by whom. • Milestones due but not achieved, why, impact, corrective action • Publications NOTE: In order to report fully on the above topics, the Deliverable may need to include information that we would not wish to make public. This material will be included in the Deliverable for the EC and Reviewers, but not in the version published on the HBP public website. INCLUDE: • Brain Atlas data package. This data, which will be deposited in the HBP Brain Atlas, will include: Maps of the vasculature; Whole-brain maps of different cellular types based on gene expression; Microcircuitry analysis, proteins and receptor distributions and fibre architecture; Maps of cellular distributions, long-range axonal projections, and synaptic proteins; reconstructed morphologies of major neuron types; Whole-brain activation maps; Spatial organization principles in brain activation; Functional maps of cortical activity. • Brain Modelling data package. This package will include strategic data on quantitative description of synaptic connections on neurons; numbers, distributions and relative densities of cells in selected regions and where possible across the whole brain; statistical parameters characterizing particular cell types and spatial arrangements between neurons, glia and blood vessels; a high-resolution quantitative synaptic map of exemplar brain regions; EM blocks scans and volume analysis of exemplar brain regions with quantification of the neuropil organization; microcircuit analysis; functional maps of brain activation; morphological and physiological comparative studies of neurons between rodent and human.