Algorithms for semantic segmentation and detection in histopathology images

Deep neural networks for detection and semantic segmentation of tissue regions in whole-slide images. Targets of trained networks will be released as a milestone during the project. Detection and segmentation algorithms will be implemented in a web-based platform available at Radboudumc, namely CIRRUS Pathology. Segmentation results will be produced in a format compatible with the in-house developed open-source platform ASAP [61], as well as CIRRUS Pathology, which will allow to inspect, modify and further process segmentation results as well as likelihood maps produced by neural networks. Novel techniques of weakly-supervised semantic in whole-slide images will be disseminated as scientific publications. The tool is tested in order to verify Milestone 8.