ERD

Periodic Reporting for period 4 - GENECLOCKS (Reconstructing a dated tree of life using phylogenetic incongruence)

Project: GENECLOCKS

Updated at: 30-04-2024

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Project acronym GENECLOCKS

Scalable empirical mixture models that account for across-site compositional heterogeneity

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

A compartment size-dependent selective threshold limits mutation accumulation in hierarchical tissues

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

MaxTiC: Fast ranking of a phylogenetic tree by Maximum Time Consistency with lateral gene transfers

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Megaphylogeny resolves global patterns of mushroom evolution

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

A rooted phylogeny resolves early bacterial evolution

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Relative Time Constraints Improve Molecular Dating

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Inferring the Deep Past from Molecular Data

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

GeneRax: A tool for species tree-aware maximum likelihood based gene tree inference under gene duplication, transfer, an...

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

The Sources of Phylogenetic Conflicts

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Polymorphism-Aware Species Trees with Advanced Mutation Models, Bootstrap, and Rate Heterogeneity

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Gene transfers can date the tree of life

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Phylogenomics provides robust support for a two-domains tree of life

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Hierarchical tissue organization as a general mechanism to limit the accumulation of somatic mutations

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

The structure of the hematopoietic system can explain chronic myeloid leukemia progression.

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Distinguishing excess mutations and increased cell death based on variant allele frequencies

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Resurrection of Ancestral Malate Dehydrogenases Reveals the Evolutionary History of Halobacterial Proteins: Deciphering ...

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

ATP synthase evolution on a cross-braced dated tree of life

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Nucleotide Usage Biases Distort Inferences of the Species Tree

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Fungal Phylogeny in the Age of Genomics: Insights Into Phylogenetic Inference From Genome-Scale Datasets

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Integrative modeling of gene and genome evolution roots the archaeal tree of life

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

RecPhyloXML: a format for reconciled gene trees

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Divergent genomic trajectories predate the origin of animals and fungi

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

An estimate of the deepest branches of the tree of life from ancient vertically evolving genes

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Genome size evolution in the Archaea

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Compositionally Constrained Sites Drive Long-Branch Attraction

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

Recoding amino acids to a reduced alphabet may increase or decrease phylogenetic accuracy

Project: GENECLOCKS

Updated at: 27-04-2024

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Project acronym GENECLOCKS

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Periodic Reporting for period 4 - GENECLOCKS (Reconstructing a dated tree of life using phylogenetic incongruence)

Scalable empirical mixture models that account for across-site compositional heterogeneity

A compartment size-dependent selective threshold limits mutation accumulation in hierarchical tissues

IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era

MaxTiC: Fast ranking of a phylogenetic tree by Maximum Time Consistency with lateral gene transfers

Megaphylogeny resolves global patterns of mushroom evolution

A rooted phylogeny resolves early bacterial evolution

Relative Time Constraints Improve Molecular Dating

Inferring the Deep Past from Molecular Data

GeneRax: A tool for species tree-aware maximum likelihood based gene tree inference under gene duplication, transfer, an...

The Sources of Phylogenetic Conflicts

Polymorphism-Aware Species Trees with Advanced Mutation Models, Bootstrap, and Rate Heterogeneity

Gene transfers can date the tree of life

Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages

Phylogenomics provides robust support for a two-domains tree of life

Hierarchical tissue organization as a general mechanism to limit the accumulation of somatic mutations

The structure of the hematopoietic system can explain chronic myeloid leukemia progression.

Distinguishing excess mutations and increased cell death based on variant allele frequencies

Resurrection of Ancestral Malate Dehydrogenases Reveals the Evolutionary History of Halobacterial Proteins: Deciphering ...

ATP synthase evolution on a cross-braced dated tree of life

Nucleotide Usage Biases Distort Inferences of the Species Tree

Fungal Phylogeny in the Age of Genomics: Insights Into Phylogenetic Inference From Genome-Scale Datasets

Integrative modeling of gene and genome evolution roots the archaeal tree of life

RecPhyloXML: a format for reconciled gene trees

Divergent genomic trajectories predate the origin of animals and fungi

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

An estimate of the deepest branches of the tree of life from ancient vertically evolving genes

Genome size evolution in the Archaea

Compositionally Constrained Sites Drive Long-Branch Attraction

Recoding amino acids to a reduced alphabet may increase or decrease phylogenetic accuracy