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Predicting gene expression levels from DNA sequences and post-transcriptional information with transformers

Project: DECIDER

Updated at: 31-12-2023

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FusionFlow: An Integrated System Workflow for Gene Fusion Detection in Genomic Samples

Project: DECIDER

Updated at: 31-12-2023

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Longitudinal single-cell RNA-seq analysis reveals stress-promoted chemoresistance in metastatic ovarian cancer

Project: DECIDER

Updated at: 31-12-2023

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Artificial intelligence-based image analysis can predict outcome in high-grade serous carcinoma via histology alone

Project: DECIDER

Updated at: 31-12-2023

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Project acronym DECIDER

Identifying the oncogenic potential of gene fusions exploiting miRNAs

Project: DECIDER

Updated at: 31-12-2023

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Data Management Plan

Project: DECIDER

Updated at: 31-12-2023

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H&E image analysis pipeline for quantifying morphological features

Project: DECIDER

Updated at: 31-12-2023

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ROR1-STAT3 signaling contributes to ovarian cancer intra-tumor heterogeneity

Project: DECIDER

Updated at: 31-12-2023

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Project acronym DECIDER

Evolutionary states and trajectories characterized by distinct pathways stratify patients with ovarian high grade serous...

Project: DECIDER

Updated at: 31-12-2023

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Project acronym DECIDER

Functional Homologous Recombination Assay on FFPE Specimens of Advanced High-Grade Serous Ovarian Cancer Predicts Clinic...

Project: DECIDER

Updated at: 31-12-2023

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Exploiting generative self-supervised learning for the assessment of biological images with lack of annotations

Project: DECIDER

Updated at: 31-12-2023

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Kinase Inhibitors in the Treatment of Ovarian Cancer: Current State and Future Promises

Project: DECIDER

Updated at: 31-12-2023

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Mutational signatures are markers of drug sensitivity of cancer cells

Project: DECIDER

Updated at: 31-12-2023

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Project acronym DECIDER

Predicting gene and protein expression levels from DNA and protein sequences with Perceiver

Project: DECIDER

Updated at: 31-12-2023

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Set up of single-cell RNA-seq and cell hashing for HGSOC

Project: DECIDER

Updated at: 31-12-2023

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A survey on data integration for multi-omics sample clustering

Project: DECIDER

Updated at: 31-12-2023

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QuantISH: RNA in situ hybridization image analysis framework for quantifying cell type-specific target RNA expression an...

Project: DECIDER

Updated at: 31-12-2023

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Spectrum of DNA mismatch repair failures viewed through the lens of cancer genomics and implications for therapy

Project: DECIDER

Updated at: 31-12-2023

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An overview of machine learning methods for monotherapy drug response prediction.

Project: DECIDER

Updated at: 31-12-2023

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Project acronym DECIDER

POIBM: batch correction of heterogeneous RNA-seq datasets through latent sample matching

Project: DECIDER

Updated at: 31-12-2023

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Project Office and Knowledge Management System up and running

Project: DECIDER

Updated at: 31-12-2023

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Project acronym DECIDER

Multiomics characterization implicates PTK7 in ovarian cancer EMT and cell plasticity and offers strategies for therapeu...

Project: DECIDER

Updated at: 31-12-2023

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Project acronym DECIDER

Activation of invasion by oncogenic reprogramming of cholesterol metabolism via increased NPC1 expression and macropinoc...

Project: DECIDER

Updated at: 31-12-2023

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Project acronym DECIDER

Toxicity and therapy outcome associations in LIG3, SLCO1B3, ABCB1, OPRM1 and GSTP1 in high-grade serous ovarian cancer.

Project: DECIDER

Updated at: 31-12-2023

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Project acronym DECIDER

Quantification of cell death and proliferation of patient-derived ovarian cancer organoids through 3D imaging and image ...

Project: DECIDER

Updated at: 31-12-2023

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Circulating tumor DNA-based copy-number profiles enable monitoring treatment effects during therapy in high-grade serous...

Project: DECIDER

Updated at: 31-12-2023

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A Subset of Secreted Proteins in Ascites Can Predict Platinum-Free Interval in Ovarian Cancer

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Updated at: 31-12-2023

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The impact of rare germline variants on human somatic mutation processes

Project: DECIDER

Updated at: 31-12-2023

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Integrating knowledge and omics to decipher mechanisms via large-scale models of signaling networks

Project: DECIDER

Updated at: 31-12-2023

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First study subject approvals package

Project: DECIDER

Updated at: 31-12-2023

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Predicting gene expression levels from DNA sequences and post-transcriptional information with transformers

FusionFlow: An Integrated System Workflow for Gene Fusion Detection in Genomic Samples

Longitudinal single-cell RNA-seq analysis reveals stress-promoted chemoresistance in metastatic ovarian cancer

Artificial intelligence-based image analysis can predict outcome in high-grade serous carcinoma via histology alone

Identifying the oncogenic potential of gene fusions exploiting miRNAs

Data Management Plan

H&E image analysis pipeline for quantifying morphological features

ROR1-STAT3 signaling contributes to ovarian cancer intra-tumor heterogeneity

Evolutionary states and trajectories characterized by distinct pathways stratify patients with ovarian high grade serous...

Functional Homologous Recombination Assay on FFPE Specimens of Advanced High-Grade Serous Ovarian Cancer Predicts Clinic...

Exploiting generative self-supervised learning for the assessment of biological images with lack of annotations

Kinase Inhibitors in the Treatment of Ovarian Cancer: Current State and Future Promises

Mutational signatures are markers of drug sensitivity of cancer cells

Predicting gene and protein expression levels from DNA and protein sequences with Perceiver

Set up of single-cell RNA-seq and cell hashing for HGSOC

A survey on data integration for multi-omics sample clustering

QuantISH: RNA in situ hybridization image analysis framework for quantifying cell type-specific target RNA expression an...

Spectrum of DNA mismatch repair failures viewed through the lens of cancer genomics and implications for therapy

An overview of machine learning methods for monotherapy drug response prediction.

POIBM: batch correction of heterogeneous RNA-seq datasets through latent sample matching

Project Office and Knowledge Management System up and running

Multiomics characterization implicates PTK7 in ovarian cancer EMT and cell plasticity and offers strategies for therapeu...

Activation of invasion by oncogenic reprogramming of cholesterol metabolism via increased NPC1 expression and macropinoc...

Toxicity and therapy outcome associations in LIG3, SLCO1B3, ABCB1, OPRM1 and GSTP1 in high-grade serous ovarian cancer.

Quantification of cell death and proliferation of patient-derived ovarian cancer organoids through 3D imaging and image ...

Circulating tumor DNA-based copy-number profiles enable monitoring treatment effects during therapy in high-grade serous...

A Subset of Secreted Proteins in Ascites Can Predict Platinum-Free Interval in Ovarian Cancer

The impact of rare germline variants on human somatic mutation processes

Integrating knowledge and omics to decipher mechanisms via large-scale models of signaling networks

First study subject approvals package