ERD

Efficient Computation of Sequence Mappability

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

phasebook: haplotype-aware de novo assembly of diploid genomes from long reads

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Accurate and fast clade assignment via deep learning and frequency chaos game representation

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Sequence-based pangenomic core detection

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

μ-PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Unary Words Have the Smallest Levenshtein k-Neighbourhoods

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

DNA copy number variation: Main characteristics, evolutionary significance, and pathological aspects

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Internal shortest absent word queries in constant time and linear space

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Nanopore base calling on the edge

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Nanopore sequencing of SARS-CoV-2: Comparison of short and long PCR-tiling amplicon protocols.

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Computational graph pangenomics: a tutorial on data structures and their applications

Project: PANGAIA

Updated at: 28-04-2024

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String Sanitization Under Edit Distance

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Approximate Circular Pattern Matching

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Repurposing non-invasive prenatal testing data: Population study of single nucleotide variants associated with colorecta...

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Bidirectional String Anchors for Improved Text Indexing and Top-K Similarity Search

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Clustering sequence graphs

Project: PANGAIA

Updated at: 28-04-2024

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Mapping-friendly sequence reductions: Going beyond homopolymer compression

Project: PANGAIA

Updated at: 28-04-2024

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Elastic-Degenerate String Matching with 1 Error

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Simpler and Faster Development of Tumor Phylogeny Pipelines

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

KFinger: Capturing Overlaps Between Long Reads by Using Lyndon Fingerprints

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

VirPool: Model-Based Estimation of SARS-CoV-2 Variant Proportions in Wastewater Samples

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Can Formal Languages Help Pangenomics to Represent and Analyze Multiple Genomes?

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as Representations of Sequencing Reads for Machine Learn...

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Finding Maximal Exact Matches Using the r-Index

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Automated prediction of the clinical impact of structural copy number variations

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

On Strings Having the Same Length-k Substrings

Project: PANGAIA

Updated at: 28-04-2024

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Systematic Genomic Surveillance of SARS-CoV-2 Virus on Illumina Sequencing Platforms in the Slovak Republic-One Year Exp...

Project: PANGAIA

Updated at: 28-04-2024

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IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences

Project: PANGAIA

Updated at: 28-04-2024

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Project acronym PANGAIA

Resources

Selected filters:

Efficient Computation of Sequence Mappability

phasebook: haplotype-aware de novo assembly of diploid genomes from long reads

Accurate and fast clade assignment via deep learning and frequency chaos game representation

Sequence-based pangenomic core detection

μ-PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data

Unary Words Have the Smallest Levenshtein k-Neighbourhoods

DNA copy number variation: Main characteristics, evolutionary significance, and pathological aspects

Internal shortest absent word queries in constant time and linear space

Nanopore base calling on the edge

Nanopore sequencing of SARS-CoV-2: Comparison of short and long PCR-tiling amplicon protocols.

Computational graph pangenomics: a tutorial on data structures and their applications

String Sanitization Under Edit Distance

Approximate Circular Pattern Matching

Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels

Repurposing non-invasive prenatal testing data: Population study of single nucleotide variants associated with colorecta...

Bidirectional String Anchors for Improved Text Indexing and Top-K Similarity Search

Clustering sequence graphs

Mapping-friendly sequence reductions: Going beyond homopolymer compression

Elastic-Degenerate String Matching with 1 Error

Simpler and Faster Development of Tumor Phylogeny Pipelines

KFinger: Capturing Overlaps Between Long Reads by Using Lyndon Fingerprints

VirPool: Model-Based Estimation of SARS-CoV-2 Variant Proportions in Wastewater Samples

Can Formal Languages Help Pangenomics to Represent and Analyze Multiple Genomes?

Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as Representations of Sequencing Reads for Machine Learn...

Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches

Finding Maximal Exact Matches Using the r-Index

Automated prediction of the clinical impact of structural copy number variations

On Strings Having the Same Length-k Substrings

Systematic Genomic Surveillance of SARS-CoV-2 Virus on Illumina Sequencing Platforms in the Slovak Republic-One Year Exp...

IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences