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The nucleotide landscape of polyXY regions

Project: REFRACT

Updated at: 29-08-2024

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Project acronym REFRACT

Report on TRP sequence and structural classification as well as sequence and structural clustering of the TRP universe.

Project: REFRACT

Updated at: 24-07-2024

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Project acronym REFRACT

Online presence (website and social media)

Project: REFRACT

Updated at: 19-07-2024

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Project acronym REFRACT

Integration of novel classification in TRP databases.

Project: REFRACT

Updated at: 19-07-2024

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Project acronym REFRACT

Deployment of TRP database APIs.

Project: REFRACT

Updated at: 19-07-2024

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Project acronym REFRACT

Symposia/Remote Symposia Period 2

Project: REFRACT

Updated at: 19-07-2024

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Project acronym REFRACT

Cross-link of generated TRP data into core data resources (e.g. InterPro) and related resources.

Project: REFRACT

Updated at: 19-07-2024

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Project acronym REFRACT

Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across sp...

Project: REFRACT

Updated at: 11-07-2024

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Project acronym REFRACT

DisProt in 2024: improving function annotation of intrinsically disordered proteins

Project: REFRACT

Updated at: 11-07-2024

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Project acronym REFRACT

PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins

Project: REFRACT

Updated at: 11-07-2024

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Project acronym REFRACT

A STRP-ed definition of Structured Tandem Repeats in Proteins

Project: REFRACT

Updated at: 11-07-2024

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Project acronym REFRACT

Short tandem repeat mutations regulate gene expression in colorectal cancer

Project: REFRACT

Updated at: 11-07-2024

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Project acronym REFRACT

Protein repeats evolve and emerge in giant viruses

Project: REFRACT

Updated at: 11-07-2024

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Project acronym REFRACT

Expanding the repertoire of human tandem repeat RNA-binding proteins

Project: REFRACT

Updated at: 11-07-2024

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Project acronym REFRACT

Critical assessment of protein intrinsic disorder prediction (<scp>CAID</scp>) ‐ Results of round 2

Project: REFRACT

Updated at: 11-07-2024

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Project acronym REFRACT

CAFA-evaluator: A Python Tool for Benchmarking Ontological Classification Methods

Project: REFRACT

Updated at: 11-07-2024

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Project acronym REFRACT

Prokaryotic membrane coat - like proteins: An update

Project: REFRACT

Updated at: 11-07-2024

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Project acronym REFRACT

RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics

Project: REFRACT

Updated at: 11-07-2024

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Project acronym REFRACT

Daisy: An integrated repeat protein curation service

Project: REFRACT

Updated at: 11-07-2024

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Project acronym REFRACT

Curation of Pfam TRP-related HMMs.

Project: REFRACT

Updated at: 12-06-2024

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Project acronym REFRACT

PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins.

Project: REFRACT

Updated at: 28-04-2024

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Project acronym REFRACT

Conference report: Biocuration 2021 Virtual Conference

Project: REFRACT

Updated at: 28-04-2024

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Project acronym REFRACT

Cookbook for TRP annotation best-practices. Report about data format gold-standard, technical and implementation best-pr...

Project: REFRACT

Updated at: 28-04-2024

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Project acronym REFRACT

APICURON: a database to credit and acknowledge the work of biocurators

Project: REFRACT

Updated at: 28-04-2024

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Project acronym REFRACT

Beyond Microsatellite Instability: Intrinsic Disorder as a Potential Link Between Protein Short Tandem Repeats and Cance...

Project: REFRACT

Updated at: 28-04-2024

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Project acronym REFRACT

Report on SLIMs in TRPs.

Project: REFRACT

Updated at: 28-04-2024

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Project acronym REFRACT

REP2: A Web Server to Detect Common Tandem Repeats in Protein Sequences

Project: REFRACT

Updated at: 28-04-2024

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Project acronym REFRACT

Pfam: The protein families database in 2021.

Project: REFRACT

Updated at: 28-04-2024

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Project acronym REFRACT

TRAL 2.0 : tandem repeat detection with circular profile hidden Markov models and evolutionary aligner

Project: REFRACT

Updated at: 28-04-2024

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Project acronym REFRACT

A novel approach to investigate the evolution of structured tandem repeat protein families by exon duplication

Project: REFRACT

Updated at: 28-04-2024

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Project acronym REFRACT

Resources

Selected filters:

The nucleotide landscape of polyXY regions

Report on TRP sequence and structural classification as well as sequence and structural clustering of the TRP universe.

Online presence (website and social media)

Integration of novel classification in TRP databases.

Deployment of TRP database APIs.

Symposia/Remote Symposia Period 2

Cross-link of generated TRP data into core data resources (e.g. InterPro) and related resources.

Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across sp...

DisProt in 2024: improving function annotation of intrinsically disordered proteins

PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins

A STRP-ed definition of Structured Tandem Repeats in Proteins

Short tandem repeat mutations regulate gene expression in colorectal cancer

Protein repeats evolve and emerge in giant viruses

Expanding the repertoire of human tandem repeat RNA-binding proteins

Critical assessment of protein intrinsic disorder prediction (<scp>CAID</scp>) ‐ Results of round 2

CAFA-evaluator: A Python Tool for Benchmarking Ontological Classification Methods

Prokaryotic membrane coat - like proteins: An update

RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics

Daisy: An integrated repeat protein curation service

Curation of Pfam TRP-related HMMs.

PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins.

Conference report: Biocuration 2021 Virtual Conference

Cookbook for TRP annotation best-practices. Report about data format gold-standard, technical and implementation best-pr...

APICURON: a database to credit and acknowledge the work of biocurators

Beyond Microsatellite Instability: Intrinsic Disorder as a Potential Link Between Protein Short Tandem Repeats and Cance...

Report on SLIMs in TRPs.

REP2: A Web Server to Detect Common Tandem Repeats in Protein Sequences

Pfam: The protein families database in 2021.

TRAL 2.0 : tandem repeat detection with circular profile hidden Markov models and evolutionary aligner

A novel approach to investigate the evolution of structured tandem repeat protein families by exon duplication