ERD

Standard protocol sample processing

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

Data analysis pipeline

Project: COMPARE

Updated at: 29-04-2024

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Full technical specifications

Project: COMPARE

Updated at: 29-04-2024

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Methodologies report

Project: COMPARE

Updated at: 29-04-2024

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Prediction algorithm AMR markers

Project: COMPARE

Updated at: 29-04-2024

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Generic workflow engine

Project: COMPARE

Updated at: 29-04-2024

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Workshop programme

Project: COMPARE

Updated at: 29-04-2024

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Sequencing workflow

Project: COMPARE

Updated at: 29-04-2024

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Tools for rapid sequence based detection of strain specific clusters

Project: COMPARE

Updated at: 29-04-2024

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Leaflet and templates

Project: COMPARE

Updated at: 29-04-2024

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Integration with map / tree / network visualisation components to the COMPARE data portal

Project: COMPARE

Updated at: 29-04-2024

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Beta version COMPARE RCT box V2

Project: COMPARE

Updated at: 29-04-2024

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Tools for detecting SNPs

Project: COMPARE

Updated at: 29-04-2024

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Validated RA model for NGS data

Project: COMPARE

Updated at: 29-04-2024

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Metagenomic Sequencing for Surveillance of Food- and Waterborne Viral Diseases

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

Discordant detection of avian influenza virus subtypes in time and space between poultry and wild birds; Towards improve...

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

Public website

Project: COMPARE

Updated at: 29-04-2024

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The Biodefense Field

Project: COMPARE

Updated at: 29-04-2024

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Novel phlebovirus detected in Haemaphysalis parva ticks in a Greek island

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

Methods for prediction of pathogen phenotype from genotype)

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

Generic RA framework

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

Outbreaks among Wild Birds and Domestic Poultry Caused by Reassorted Influenza A(H5N8) Clade 2.3.4.4 Viruses, Germany, 2...

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotav...

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

A novel alphaherpesvirus associated with fatal diseases in banded Penguins

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

A novel astrovirus associated with encephalitis and ganglionitis in domestic sheep

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

Bacterial pathogens and endosymbionts in ticks

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

Zoonotic Transmission of mcr-1 Colistin Resistance Gene from Small-Scale Poultry Farms, Vietnam

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease

Project: COMPARE

Updated at: 29-04-2024

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Variegated Squirrel Bornavirus 1 in Squirrels, Germany and the Netherlands

Project: COMPARE

Updated at: 29-04-2024

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Project acronym COMPARE

Resources

Selected filters:

Standard protocol sample processing

Data analysis pipeline

Full technical specifications

Methodologies report

Prediction algorithm AMR markers

Generic workflow engine

Workshop programme

Sequencing workflow

Tools for rapid sequence based detection of strain specific clusters

Leaflet and templates

Integration with map / tree / network visualisation components to the COMPARE data portal

Beta version COMPARE RCT box V2

Tools for detecting SNPs

Validated RA model for NGS data

Metagenomic Sequencing for Surveillance of Food- and Waterborne Viral Diseases

Discordant detection of avian influenza virus subtypes in time and space between poultry and wild birds; Towards improve...

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes

Public website

The Biodefense Field

Novel phlebovirus detected in Haemaphysalis parva ticks in a Greek island

Methods for prediction of pathogen phenotype from genotype)

Generic RA framework

Outbreaks among Wild Birds and Domestic Poultry Caused by Reassorted Influenza A(H5N8) Clade 2.3.4.4 Viruses, Germany, 2...

Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotav...

A novel alphaherpesvirus associated with fatal diseases in banded Penguins

A novel astrovirus associated with encephalitis and ganglionitis in domestic sheep

Bacterial pathogens and endosymbionts in ticks

Zoonotic Transmission of mcr-1 Colistin Resistance Gene from Small-Scale Poultry Farms, Vietnam

Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease

Variegated Squirrel Bornavirus 1 in Squirrels, Germany and the Netherlands