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Designing ecologically optimized pneumococcal vaccines using population genomics

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Mandrake: visualizing microbial population structure by embedding millions of genomes into a low-dimensional representat...

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

The effect of recombination on the evolution of a population of Neisseria meningitidis.

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Genome-wide association, prediction and heritability in bacteria with application to Streptococcus pneumoniae

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

High-resolution sweep metagenomics using fast probabilistic inference

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen Enterococcus faeciu...

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections: a nationwide...

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

The global dissemination of hospital clones of Enterococcus faecium

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

PYLFIRE: Python implementation of likelihood-free inference by ratio estimation.

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Sequentially guided MCMC proposals for synthetic likelihoods and correlated synthetic likelihoods

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Periodic Reporting for period 4 - SCARABEE (Scalable inference algorithms for Bayesian evolutionary epidemiology)

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Real-time sampling of travelers shows intestinal colonization by multidrug-resistant bacteria to be a dynamic process wi...

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

New Pathogenesis Mechanisms and Translational Leads Identified by Multidimensional Analysis of Necrotizing Myositis in P...

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Genome evolution and emergence of pathogenicity in Avian Escherichia coli

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

On the Jensen-Shannon divergence and the variation distance for categorical probability distributions

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Probabilistic elicitation of expert knowledge through assessment of computer simulations

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Fine-scale haplotype structure reveals strong signatures of positive selection in a recombining bacterial pathogen

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Quantifying bacterial evolution in the wild: a birthday problem for Campylobacter lineages.

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Convergent Amino Acid Signatures in Polyphyletic Campylobacter jejuni Subpopulations Suggest Human Niche Tropism

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

SuperDCA for genome-wide epistasis analysis

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Co-evolutionary signals identify Burkholderia pseudomallei survival strategies in a hostile environment

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Bacterial Genomic Epidemiology with Mixed Samples

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Likelihood-free inference by ratio estimation

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

International links between Streptococcus pneumoniae vaccine serotype 4 sequence type (ST) 801 in Northern European ship...

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Mode and dynamics of vanA -type vancomycin resistance dissemination in Dutch hospitals

Project: SCARABEE

Updated at: 27-04-2024

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Project acronym SCARABEE

Resources

Selected filters:

Designing ecologically optimized pneumococcal vaccines using population genomics

Mandrake: visualizing microbial population structure by embedding millions of genomes into a low-dimensional representat...

The effect of recombination on the evolution of a population of Neisseria meningitidis.

Genome-wide association, prediction and heritability in bacteria with application to Streptococcus pneumoniae

High-resolution sweep metagenomics using fast probabilistic inference

Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen Enterococcus faeciu...

Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections: a nationwide...

The global dissemination of hospital clones of Enterococcus faecium

PYLFIRE: Python implementation of likelihood-free inference by ratio estimation.

Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting

Sequentially guided MCMC proposals for synthetic likelihoods and correlated synthetic likelihoods

Periodic Reporting for period 4 - SCARABEE (Scalable inference algorithms for Bayesian evolutionary epidemiology)

Real-time sampling of travelers shows intestinal colonization by multidrug-resistant bacteria to be a dynamic process wi...

New Pathogenesis Mechanisms and Translational Leads Identified by Multidimensional Analysis of Necrotizing Myositis in P...

mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species

Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae

Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions

Genome evolution and emergence of pathogenicity in Avian Escherichia coli

On the Jensen-Shannon divergence and the variation distance for categorical probability distributions

Probabilistic elicitation of expert knowledge through assessment of computer simulations

Fine-scale haplotype structure reveals strong signatures of positive selection in a recombining bacterial pathogen

Quantifying bacterial evolution in the wild: a birthday problem for Campylobacter lineages.

Convergent Amino Acid Signatures in Polyphyletic Campylobacter jejuni Subpopulations Suggest Human Niche Tropism

SuperDCA for genome-wide epistasis analysis

Co-evolutionary signals identify Burkholderia pseudomallei survival strategies in a hostile environment

Bacterial Genomic Epidemiology with Mixed Samples

Likelihood-free inference by ratio estimation

Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov

International links between Streptococcus pneumoniae vaccine serotype 4 sequence type (ST) 801 in Northern European ship...

Mode and dynamics of vanA -type vancomycin resistance dissemination in Dutch hospitals