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Oktoberfest: Open-source spectral library generation and rescoring pipeline based on Prosit

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Widespread amyloidogenicity potential of multiple myeloma patient-derived immunoglobulin light chains

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Secretome Screening of BRAFV600E-Mutated Colon Cancer Cells Resistant to Vemurafenib

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

System-wide analysis of RNA and protein subcellular localization dynamics

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Report on Coordination activities with ELIXIR

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

LFQ-Based Peptide and Protein Intensity Differential Expression Analysis

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Optimal analytical strategies for sensitive and quantitative phosphoproteomics using TMT-based multiplexing

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

"Response to ""BAP1 Germline Mutation Associated with Bilateral Primary Uveal Melanoma"

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Robust Summarization and Inference in Proteome-wide Label-free Quantification

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

PDBe-KB: collaboratively defining the biological context of structural data,

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Report on guidelines for data submission (data management plan)

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Protocol for high-throughput semi-automated label-free- or TMT-based phosphoproteome profiling

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Obtaining Complete Human Proteomes

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Standard protocol for intact protein analysis including sample preparation, LC-MS/MS and data analysis

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Sensitive and Specific Spectral Library Searching with CompOmics Spectral Library Searching Tool and Percolator

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Mapping Physiological ADP-Ribosylation Using Activated Ion Electron Transfer Dissociation

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

MaxQuant.Live Enables Enhanced Selectivity and Identification of Peptides Modified by Endogenous SUMO and Ubiquitin

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

MS Annika: A New Cross-Linking Search Engine

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

MS(2)Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Crosstalk between H2A variant-specific modifications impacts vital cell functions

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Quantitative Longitudinal Inventory of the N -Glycoproteome of Human Milk from a Single Donor Reveals the Highly Variabl...

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Cov-MS: A Community-Based Template Assay for Mass-Spectrometry-Based Protein Detection in SARS-CoV-2 Patients

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Single-cell derived tumor organoids display diversity in HLA class I peptide presentation

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Staphylococcal protein A inhibits complement activation by interfering with IgG hexamer formation

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Systemic LRG1 Expression in Melanoma is Associated with Disease Progression and Recurrence

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate binding

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Label-free single cell proteomics utilizing ultrafast LC and MS instrumentation: A valuable complementary technique to m...

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

FLASHIda enables intelligent data acquisition for top-down proteomics to boost proteoform identification counts

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Resources

Selected filters:

Oktoberfest: Open-source spectral library generation and rescoring pipeline based on Prosit

Widespread amyloidogenicity potential of multiple myeloma patient-derived immunoglobulin light chains

Secretome Screening of BRAFV600E-Mutated Colon Cancer Cells Resistant to Vemurafenib

System-wide analysis of RNA and protein subcellular localization dynamics

Report on Coordination activities with ELIXIR

LFQ-Based Peptide and Protein Intensity Differential Expression Analysis

Optimal analytical strategies for sensitive and quantitative phosphoproteomics using TMT-based multiplexing

"Response to ""BAP1 Germline Mutation Associated with Bilateral Primary Uveal Melanoma"

Robust Summarization and Inference in Proteome-wide Label-free Quantification

PDBe-KB: collaboratively defining the biological context of structural data,

Report on guidelines for data submission (data management plan)

Protocol for high-throughput semi-automated label-free- or TMT-based phosphoproteome profiling

Obtaining Complete Human Proteomes

Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers

Standard protocol for intact protein analysis including sample preparation, LC-MS/MS and data analysis

Sensitive and Specific Spectral Library Searching with CompOmics Spectral Library Searching Tool and Percolator

Mapping Physiological ADP-Ribosylation Using Activated Ion Electron Transfer Dissociation

MaxQuant.Live Enables Enhanced Selectivity and Identification of Peptides Modified by Endogenous SUMO and Ubiquitin

MS Annika: A New Cross-Linking Search Engine

MS(2)Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates

Crosstalk between H2A variant-specific modifications impacts vital cell functions

Quantitative Longitudinal Inventory of the N -Glycoproteome of Human Milk from a Single Donor Reveals the Highly Variabl...

Cov-MS: A Community-Based Template Assay for Mass-Spectrometry-Based Protein Detection in SARS-CoV-2 Patients

Single-cell derived tumor organoids display diversity in HLA class I peptide presentation

Staphylococcal protein A inhibits complement activation by interfering with IgG hexamer formation

Systemic LRG1 Expression in Melanoma is Associated with Disease Progression and Recurrence

ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics

Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate binding

Label-free single cell proteomics utilizing ultrafast LC and MS instrumentation: A valuable complementary technique to m...

FLASHIda enables intelligent data acquisition for top-down proteomics to boost proteoform identification counts