ERD

The Age of Data‐Driven Proteomics: How Machine Learning Enables Novel Workflows

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

The ProteomeXchange consortium in 2020: enabling ‘big data’ approaches in proteomics

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Fishing for newly synthesized proteins with phosphonate-handles

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Generalized Calibration Across Liquid Chromatography Setups for Generic Prediction of Small-Molecule Retention Times

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Scop3P: A Comprehensive Resource of Human Phosphosites within Their Full Context

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Robust Summarization and Inference in Proteome-wide Label-free Quantification

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for Seamless End-to-End Metaproteomics Data Analysis

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

N-Terminal Proteoforms in Human Disease

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Resolving heterogeneous macromolecular assemblies by Orbitrap-based single-particle charge detection mass spectrometry

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Simple Peptide Quantification Approach for MS-Based Proteomics Quality Control

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Removing the Hidden Data Dependency of DIA with Predicted Spectral Libraries

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

To Cleave or Not To Cleave in XL-MS?

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Generating high quality libraries for DIA MS with empirically corrected peptide predictions

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

The omics discovery REST interface

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

FLASHDeconv: Ultrafast, High-Quality Feature Deconvolution for Top-Down Proteomics

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Proteases Immobilization for In Situ Time-Limited Proteolysis on MALDI Chips

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search en...

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Targeting proline in (phospho)proteomics

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Missing regions within the molecular architecture of human fibrin clots structurally resolved by XL-MS and integrative s...

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral lib...

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Enrichment of histones from patient samples for mass spectrometry-based analysis of post-translational modifications

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

EPIFANY: A Method for Efficient High-Confidence Protein Inference

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Binding of eIF3 in complex with eIF5 and eIF1 to the 40S ribosomal subunit is accompanied by dramatic structural changes

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

PhoX: An IMAC-Enrichable Cross-Linking Reagent

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Improved Sensitivity in Low-Input Proteomics Using Micropillar Array-Based Chromatography

Project: EPIC-XS

Updated at: 28-04-2024

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Project acronym EPIC-XS

Resources

Selected filters:

The Age of Data‐Driven Proteomics: How Machine Learning Enables Novel Workflows

The ProteomeXchange consortium in 2020: enabling ‘big data’ approaches in proteomics

Fishing for newly synthesized proteins with phosphonate-handles

Generalized Calibration Across Liquid Chromatography Setups for Generic Prediction of Small-Molecule Retention Times

Scop3P: A Comprehensive Resource of Human Phosphosites within Their Full Context

Robust Summarization and Inference in Proteome-wide Label-free Quantification

Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for Seamless End-to-End Metaproteomics Data Analysis

A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients

N-Terminal Proteoforms in Human Disease

Resolving heterogeneous macromolecular assemblies by Orbitrap-based single-particle charge detection mass spectrometry

Simple Peptide Quantification Approach for MS-Based Proteomics Quality Control

Removing the Hidden Data Dependency of DIA with Predicted Spectral Libraries

To Cleave or Not To Cleave in XL-MS?

Generating high quality libraries for DIA MS with empirically corrected peptide predictions

The omics discovery REST interface

The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases

FLASHDeconv: Ultrafast, High-Quality Feature Deconvolution for Top-Down Proteomics

ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL

Proteases Immobilization for In Situ Time-Limited Proteolysis on MALDI Chips

Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites

Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search en...

Targeting proline in (phospho)proteomics

Missing regions within the molecular architecture of human fibrin clots structurally resolved by XL-MS and integrative s...

Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral lib...

ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion

Enrichment of histones from patient samples for mass spectrometry-based analysis of post-translational modifications

EPIFANY: A Method for Efficient High-Confidence Protein Inference

Binding of eIF3 in complex with eIF5 and eIF1 to the 40S ribosomal subunit is accompanied by dramatic structural changes

PhoX: An IMAC-Enrichable Cross-Linking Reagent

Improved Sensitivity in Low-Input Proteomics Using Micropillar Array-Based Chromatography